Package 'minptest' Title Gene Region-level Testing Procedure for Snp Data, Using the Min P Test Resampling Approach
نویسنده
چکیده
Description Package minPtest is designed for estimating a gene region-level summary for SNP data from case-control studies using a permutation-based resam-pling method, called min P test,allowing execution on a compute cluster or multicore computer.
منابع مشابه
Package 'triogxe' Title a Data Smoothing Approach to Explore and Test Gene-environment Interaction in Case-parent Trio Data
Description The package contains functions that 1) estimates gene-environment interaction between a SNP and a continuous non-genetic attribute by fitting a generalized additive model to case-parent trio data, 2) produces graphical displays of estimated interaction, 3) performs permutation test of gene-environment interaction; 4) simulates informative case-parent trios.
متن کاملStatistical Computing 2011 Abstracts Der 43. Arbeitstagung Statistical Computing 2011 Workshop Program Differential Expression Analysis for Sequence Count Data
Stefanie Hieke (Freiburg) Min P-test: a resampling based gene region-level testing procedure for genetic case-control studies implemented in R 09:30-10:00 Michel Lang (Dortmund) Survival models with preclustered gene groups as covariates 10:00-10:30 Aslihan Gerhold-Ay (Mainz) Evaluation and validation of gene expression signatures for prognostic use in negative breast cancer patients Khalid Abn...
متن کاملA Research on Association between SCD1 and OLR1 Genes and Milk Production Traits in Iranian Holstein Dairy Cattle
The present study was carried out to investigate the association of C/T single nucleotide polymorphism(SNP)in exon 5 of stearoyl-CoA desaturase 1 (SCD1) gene and A/C SNP in the 3' untranslated region of oxidized low density lipoprotein receptor 1 (OLR1)gene with milk production traits in Iranian Holstein dairy Cattle. The blood samples of 153 (for OLR1) and 308 (for SCD1) dairy cattle from thre...
متن کاملFuzzy decision making in testing hypotheses: An introduction to the packages ``FPV" and ``Fuzzy.p.value" with practical examples
This paper reviews and compares two R packages ``FPV" and ``Fuzzy.p.value".These packages are designed for testing hypotheses in a fuzzy environment using a fuzzy $p$-value based approach.In fact, the packages ``FPV" and ``Fuzzy.p.value" propose some useful functions for testing hypotheses when the data / hypotheses are fuzzy rather than crisp.The proposed methods and function...
متن کاملIn Katrina’s Wake
We studied several methods for selecting single-nucleotide polymorphisms (SNPs) in a disease association study. Two major categories for analytical strategy are the univariate and the set selection approaches. The univariate approach evaluates each SNP marker one at a time, while the set selection approach tests disease association of a set of SNP markers simultaneously. We examined various tes...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره شماره
صفحات -
تاریخ انتشار 2013